DATA:
Aquascope (raw) data
https://doi.org/10.25678/000C2G
CTD, METEO and Chemistry data (cleaned)
https://doi.org/10.25678/000C8P
Latest CTD and Meteo station data
https://sensors-eawag.ch/greifensee/main.php
https://www.datalakes-eawag.ch/data
Latest Aquascope time series data
https://www.datalakes-eawag.ch/datadetail/1387
Lake Greifen Spectral Data
https://www.datalakes-eawag.ch/datadetail/505
EPFL MeteoLakes – calibrated lake physics models
meteolakes.ch
aquascope manufacturer
RESOURCES
SPCConvert: Eawag version of the python scripts developed by P. Roberts at SIO, to convert raw region of interest in images from the plankton. https://github.com/tooploox/SPCConvert (original version)
https://github.com/phytoecoeawag/SPCConvert (version adapted by Phytoplankton Ecology group)
GitHub – guatek/SPCConvert (version for camera on Zugersee)
Plankifier (2020): Code for plankton dataset creation and classification based on Keras. By the group of M. Baity-Jesi at Eawag. https://github.com/mbaityje/plankifier
Plankiformer (2022): Code for plankton dataset creation and classification. By the group of M. Baity-Jesi at Eawag. https://github.com/kspruthviraj/Plankiformer
Lit Eclogy Classifier (2024): Code for plankton dataset creation and classification. By the group of M. Baity-Jesi at Eawag and Benno Käch. https://github.com/kaechb/lit_ecology_classifier
Phytoplankton Ecology Lab GITHUB: scripts for data processing and analysis
https://github.com/phytoecoeawag
Taxonify: this is a platform that expedites the process of species annotation for automated classification. It supports image browsing and annotation in a way that is optimal for taxonomists and their annotation workflow. Taxonify is free and open source – you can download, modify it and use it according to your needs!
https://www.taxonify.org/
community
Plankton Ecology Lab
https://www.eawag.ch/en/department/eco/main-focus/plankton-ecology/
CyanoBloom project
https://cyanobloom.ch/
Eawag – Swiss Federal Institute of Aquatic Science and Technology
https://www.eawag.ch
Jacobs University
https://www.jacobs-university.de
Jaffe Lab for Underwater Imaging
http://jaffeweb.ucsd.edu/
Scripps Plankton Camera System
http://spc.ucsd.edu/
funding:
Swiss National Science Foundation (SNSF)
http://www.snf.ch
German Research Foundation (DFG)
https://www.dfg.de
AQUASCOPE 